Instructions for uploading Gedcom files are located here
www.wikitree.com/wiki/GEDCOM
It has been quite a few years since I've uploaded mine. I do, however, remember that part of the process is to review a spreadsheet generated by the system (called GEDCompare) of potentially duplicated profiles for the same person - ie. A person on your Gedcom file already has a profile in Wikitree. You manually decide if the two profiles are the same person, in which case you un-check that person on your Gedcom so they are not added again, or you allow the upload because, although very similar in data set, the two are actually different people.