Um, it doesn't?
The GEDCOMpare utility can be used to add information to WikiTree the same way that the other approaches/interfaces do it: one profile at a time.
(I have no experience with using GEDCOMpare with actual matching existing profiles, as my family is entirely off on its own island so far on WT, but I believe the process is similar to a merge of two profiles, in that you can choose what information to keep/transfer.)