He married Mabel Satira Fleet (1879–1918), the daughter of Charles Fleet (1842-1888) and Mary Alice Jenkins (1851-1929). They had the following children:
John Gilman "Jack" Dayton (1903–1982), who married Mary Elsie Vanwart (1910–1993).
Eva Fleet Dayton 1904–1993
Ernest Jenkins "Bud" Dayton 1906–1995
Muriel "Olive" Dayton 1908–1993
Anne Margaret Dayton 1910–1990
George Samuel Dayton 1912–1992
Mary Josephine Dayton 1914–1918
He passed away in 1949. Burial: Alexander Gibson Memorial Cemetery, Marysville, York County, New Brunswick, Canada.
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